This guide takes you from zero to your first pay run. If you’re brand new to Flow Payroll, follow it top to bottom. Each step links to a deeper guide if you want more detail.Documentation Index
Fetch the complete documentation index at: https://docs.flowpayroll.ai/llms.txt
Use this file to discover all available pages before exploring further.
Flow Payroll uses UK payroll terms throughout — PAYE, NI, RTI, FPS, EPS, P45, P60. If any are unfamiliar, the key concepts guide explains them.
Before you begin
You’ll get set up faster if you have these to hand:- Your organisation’s PAYE reference and Accounts Office reference from HMRC.
- Your HMRC Government Gateway credentials for RTI submissions.
- Each employee’s personal and employment details (name, address, date of birth, NI number, start date, tax code, and pay).
- Your pay schedule — how often you pay people (weekly, fortnightly, four-weekly, or monthly) and the pay day.
Set up in five steps
Configure your organisation
Add your company details and HMRC settings so submissions are attributed correctly.Set up your organisation →
Create a pay run schedule
Define how often you pay people and on which day. This drives every pay run.Configure pay run settings →
Add your people
Add employees individually or import them in bulk, including their tax codes, NI category, and pay.Add and manage people →
Run your first pay run
Enter or import hours and adjustments, review the calculated pay, and approve.Run a pay run →
Submit to HMRC and share payslips
Send your Full Payment Submission (FPS) to HMRC, then send payslips to your team.HMRC & RTI → · Payslips →
What happens next
Once your first pay run is done, most months follow the same rhythm:- Review who’s being paid and update anyone whose pay or details changed.
- Add any statutory payments, pension changes, or court-order deductions.
- Run the pay run and submit the FPS on or before pay day.
- Submit your EPS at month-end if you have anything to report.
Where to go next
Key concepts
The building blocks: organisations, pay runs, payslips, RTI, and more.
Auto-enrolment
Assess and enrol workers into a workplace pension.
Statutory payments
Sick, maternity, paternity, adoption, and shared parental pay.
Reports
Reporting and insights — coming soon.